HTGAA: Intro, Principles & Practices
- David Kong (MIT), George Church (Harvard), Megan Palmer (Stanford)
Class Material
Principles & Practices Assignments
Ethics, safety and security are essential considerations throughout (and beyond!) this class. We have therefore designed an assignment this week to give you a strong foundation, and then will ask you to reflect each week and in the design of your final project.
Assignment: Design one “governance” action to ensure an “ethical” future for biotechnology Some example actions for ensuring non-maleficence (e.g. preventing harm) include: require ethics and safety training to get access to labs and materials, pre-registering potentially dangerous experiments, product safety standards and testing, licensing all synthetic biologists, create a whistleblowing mechanism for bad behavior, developing a safety innovation prize, etc.)In 3 sections present (to the best of your knowledge, with a little digging. Feel free to use analogies to other areas of science and engineering, e.g. 3D printing, drones etc ):
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Goals & Rationale
- How does it work now (to the best of your knowledge) and how would you like that to change?
- Why is this change desirable? (Try to suggest ethical the principle(s) you might you be applying e.g. non-malificence, justice)?
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Design & Requirements
- What action(s) do you propose? What are alternatives? (see examples above)
- What is needed to make it “work”? (who must opt in, fund, approve, implement, etc)
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Assumptions & Risks of “Success”
- What are potential unintended consequences of your proposed actions?
- What could you have wrong (incorrect assumptions, uncertainties)?
Please upload week1 assignment on your website on Gitlab
Related Readings & References
- Ogden, Kelsic, Science 2019
https://science.sciencemag.org/content/366/6469/1139.long
- 2012 Science Church, Gao, Kosuri
https://science.sciencemag.org/content/337/6102/1628.long
- Kalhor, Mali, Church 2016 Nature Methods
https://www.nature.com/articles/nmeth.4108
- Kalhor, Mali, Church 2018 Science
https://science.sciencemag.org/content/361/6405/eaat9804.long
- ZFN: Torikai…Cooper Blood 2013 (U. TX)
https://ashpublications.org/blood/article-lookup/doi/10.1182/blood-2013-03-478255
- TALEN: Valton…Poirot L. Molec Therap 2015 (Cellectis)
https://www.sciencedirect.com/science/article/pii/S1525001616302787?via%3Dihub
- CRISPR: Liu…Wang Cell Research 2-Dec-2016 (Beijing)
https://www.nature.com/articles/cr2016142
- Yang, et al 2015 Science
https://science.sciencemag.org/content/350/6264/1101.long
- Niu, et al. 2017 Science
https://science.sciencemag.org/content/357/6357/1303.long
- Responsible Innovation. 2017 Harnessing gene drive. Min, Smidler, Najjar, Esvelt
https://www.tandfonline.com/doi/full/10.1080/23299460.2017.1415586
- The Hallmarks of Aging Carlos López-Otín, et al. Cell 2013
https://www.sciencedirect.com/science/article/pii/S0092867413006454?via%3Dihub
- Noah Davidsohn et al. PNAS
https://www.pnas.org/content/116/47/23505
Useful Resources
- iGEM Safety Hub: This page includes links to many useful resources including the WHO biosafety manual, the NIH guidelines and the CDC Biosafety in Microbial and Biomedical Laboratories Guide
- SynTechBio Tools: This page links to a first version of a biohacker manual to help you get your DIY-Bio Space up and running
- DIYBio Ask a biosafety expert This page includes a portal where you can get your biosafety questions answered by professionals
- US Presidential Commission on the Study of Bioethical Issues Report: "New Directions: The Ethics of Synthetic Biology and Emerging Technologies” This report considers the ethics of biotechnology and other emerging technologies
- Synopsis of Biological Safety and Security Arrangements (Gronvall & Rozo (2015): This report describes biosafety and biosecurity rules and regulations in many countries
- Synthetic Genomics: Options for Governance This is an older but useful report for thinking about a variety of options for the governance of biotechnology